Workshop for ENCODE 2019: Research Applications and Users Meeting

WASHU EPIGENOME BROWSER

Description

Advances in next-generation sequencing platforms have reshaped the landscape of genomic and epigenomic research as well as human genetics studies. Annotating the non-coding, regulatory genome with genomic and epigenomic data has provided new venues to interpret the functional consequences of genetic variants associated with human complex traits. Large consortiums such as ENCODE, Roadmap Epigenomics, and 4D Nucleome projects have generated tens of thousands of sequencing-based genome-wide datasets, creating a reference and resource for the scientific community. There is a great need for investigators to effectively engage with this resource in the context of analyzing investigators’ own data.

This interactive workshop will introduce genomic resources produced by consortiums including ENCODE, Roadmap Epigenomics, and 4DN, and the WashU Epigenome Browser and associated tools (http://epigenomegateway.wustl.edu/). The Epigenome Browser hosts hundreds of thousands of genomic datasets produced by large consortiums and investigators, and supports navigation of the data and its interactive visualization, integration, comparison, and analysis. Attendees will gain hands-on experience with exploring the most current epigenomic resources, and with advanced visual-bioinformatics tools including gene set view, genome juxtaposition, and chromatin-interaction display, inventions unique to the WashU Epigenome Browser. Through specific examples, the workshop will demonstrate the power of “big bio-data”.

Presenter

Ting Wang

When and Where

Tuesday July 9, 1:30 PM – 3:30 PM
Bell Harbor International Conference Center, Seattle, WA

Browser Booklet

  • Download a PDF version.

Tutorial Book

  • Download a PDF version.

Session file download

MLT1.json

Region set

            chr1:1045099-1045732
            chr1:1253756-1254042
            chr1:1545345-1545429
            chr1:1617801-1617888
            chr1:1790105-1790455
            chr1:1814987-1815095
            chr1:1828629-1828773
            chr1:1927723-1927931
            chr1:2107510-2107829
            chr1:3398974-3399081
            chr1:3492059-3492417
            chr1:3577197-3577986
            chr1:3691608-3691772
            chr1:3709956-3710478
            chr1:3724332-3724667
            chr1:3786598-3786703
            chr1:4068006-4068170
            chr1:5916634-5917048
            chr1:5953222-5954230
            chr1:5977802-5978150

Past Workshops

2019 City Of Hope Workshop

Workshop at 2019 City Of Hope.

2018 Keystone Workshop

Workshop at 2018 Keystone Symposia DNA and RNA Methylation (A7).

2017 Cancer Genetics & Epigenetics, Gordon Research Conference

Workshop at 2017 Gordon Research Conference.

2016 NIEHS Environmental Health Science FEST

Workshop at NIEHS Environmental Health Science FEST 2016.

2016 WashU Epigenome Day

Workshop at WashU Epigenome Day 2016.

2016 ASHG Workshop

Workshop at 2016 ASHG 3D Genome Organization and Chromatin Interaction workshop.

2016 Keystone Workshop

Workshop at 2016 Keystone Symposia.

2016 SOT Workshop

Workshop at SOT 2016 Satellite Meeting.

2016 Epigenomics Workshop

Workshop at EPIGENOMICS 2016.

2015 Roadmap Epigenomic Workshop

Workshop at The First International Epigenomics Conference.

Keystone joint meeting on Epigenomics and DNA methylation 2015

Workshop at 2015 Keystone: Epigenomic Annotation of Transposable Elements Using The Washington University Epigenome Browser.

American Society of Human Genetics 2014

Workshop at 2014 ASHG: Epigenomic Annotation of Genetic Variants Using The Washington University Epigenome Browser.