WASHU EPIGENOME BROWSER
v46.2 |
Resources ▾ |
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80mpg | |||||||||||||
No metadata annotation.
Click button to annotate.
Metadata annotation |
WASHU EPIGENOME BROWSER | g+ |
Sessions | ✕ | ? |
Current session ID | ▼ Save | ▲ Retrieve | ⬆ Upload |
Genome snapshot | ✕ |
Screenshot | ✕ |
This generates an SVG file that can be printed to PDF format with your web browser
Gene & region set | ✕ | ? |
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File upload | ✕ | ? |
Supported formats: | BED, GFF, and custom format for positional annotation data. bedGraph and Wiggle for numerical data. Pairwise interaction format for (but not limited to) 5C, Chia-Pet, Hi-C results. Hammock for annotation data. Calling card (experimental). |
Format: |
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Scatter plot | ✕ | Go back |
No gene set selected | ||
for X axis | for Y axis |
Experimental assay tracks | ✕ | ? |
Public track hubs | ✕ | ? |
Add new custom tracks | ✕ | Go back |
Circlet plot | ✕ | ? |
Gene plot | ✕ | Go back |
All genes and genomic intervals are tiled together, genes are always from 5' to 3' end, relative to their strands. Track data of each gene are summarized into fixed length vectors, and median value over each data point is plotted. Number of data points Line width box colorimage width height |
One line is plotted for each gene or item, genes are always from 5' to 3', relative to their strands. Track data of each gene and item are summarized into equal length vectors. Number of data points Line width line colorimage width height |
Profiles of gene parts (3 kb promoter, 5' UTR, exons, introns, 3' UTR) will be plotted as separate curves, in the same fashion as first plot type (only applies to genes, genomic coordinates will be skipped) Number of data points for each segment type Line width image width height promoter 5' UTR exons introns 3' UTR Above colors are for median curves. Lighter color will be used for other curves.whisker range outlier about these options |
Run hierarchical or K-means clustering analysis on genes, and explore result through its interactive features.
distance metric agglomeration number of clusters Row height plot width of data points |
Get data
Validate datahub | ✕ |
From URL | ||
From file | ||
Navigate regions | ✕ | PREV | NEXT |
Find orthologs | ✕ |
Heatmap | Arc | Full | Thin | Density | Barplot |
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tick size | |
link line height |
✚ | ━ | + | - |
✚ | ━ | + | - | Unify |
✚ | ━ |
File upload Upload data from text files |
Gene & region set Create and manage sets of genes/regions |
Genome snapshot View track at whole-genome scale |
Scatter plot Compare two tracks over a gene set |
Split panel Create a secondary browser panel |
Session Save and share contents |
Screenshot Make publication-quality image |
Browser panel width
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red green blue yellow maroon olive orange teal fuchsia slateblue indigo brown crimson bluevelvet dimgray |